Impact of PGPR Seed Priming on Germination, Yield, and Metabolite Profile of Basil (Ocimum basilicum L.) and Sage (Salvia officinalis L.)

Authors

DOI:

https://doi.org/10.31285/AGRO.30.1862

Keywords:

Streptomyces, Bacillus, siderophore, rosmarinic acid, antioxidant

Abstract

This study evaluated the potential of plant growth-promoting rhizobacteria (PGPR) from the genera Bacillus and Actinomycetes to enhance growth and secondary metabolite production in basil (Ocimum basilicum L.) and sage (Salvia officinalis L.). Six isolates obtained from the rhizosphere of Urtica dioica, including three Bacillus spp. (Bac1-Bac3) and three actinomycetes (Act1-Act3), were morphologically and biochemically characterized and screened for physiological tolerance and plant growth-promoting (PGP) traits, identifying two isolates with strong PGP potential. The selected strains were further evaluated in in vitro seed inoculation assays and pot experiments under controlled conditions. Plant yield parameters were assessed alongside biochemical analyses of plant material including total phenolics, rosmarinic acid content, phenylalanine ammonia-lyase activity, and antioxidant capacity. Inoculation with selected strains significantly improved early seedling performance, including germination (Act1 up to 117% in sage), root elongation (Act1 up to 200%), and shoot elongation (Bac3 up to 175%). After six weeks, Act1 maximized sage fresh biomass (77.6%), while Bac3 enhanced basil dry matter (60% increase). Beyond growth promotion, PGPR treatments significantly increased phenolic content, rosmarinic acid concentration, phenylalanine ammonia-lyase activity, and antioxidant capacity (lower IC₅₀ values), indicating activation of the phenylpropanoid pathway. Molecular identification (16S rRNA sequencing) revealed Bac3 as Bacillus pretiosus (97.95% identity) and Act1 as Streptomyces ardesiacus (97.73% identity).

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References

Ahmad, F., Ahmad, I., & Khan, M. S. (2008). Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiological Research, 163(2), 173-181. https://doi.org/10.1016/j.micres.2006.04.001

Ali, A., Khalid, R., Ali, S., Akram, Z., & Hayat, R. (2015). Characterization of plant growth-promoting rhizobacteria isolated from chickpea (Cicer arietinum). Microbiology Research Journal International, 6(1), 32-40. https://doi.org/10.9734/BMRJ/2015/14496

Babu, P. M., Panda, N., Nayak, R. K., Sethi, D., Biswal, S., Mishra, M. K., Datta, S., Karubakee, S., Suchitha, N. S., Prusty, M., Nayak, A., Dash, R., & Pattanayak, S. K. (2025). Isolation, characterization and screening of phosphate (P) solubilizing actinomycetes and exploring its potency in finger millet (Eleusine coracana L.). BMC Plant Biology, 25(1), Article 362. https://doi.org/10.1186/s12870-025-06385-1

Backer, R., Rokem, J. S., Ilangumaran, G., Lamont, J., Praslickova, D., Ricci, E., Subramanian, S., & Smith, D. L. (2018). Plant Growth-Promoting Rhizobacteria: Context, mechanisms of action, and roadmap to commercialization of biostimulants for sustainable agriculture. Frontiers in Plant Science, 9, Article 1473. https://doi.org/10.3389/fpls.2018.01473

Benson, H. J. (2002). Microbiological applications: A laboratory manual in general microbiology (8th ed.). McGraw-Hill.

Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry, 72, 248-254. https://doi.org/10.1016/0003-2697(76)90527-3

Brand-Williams, W., Cuvelier, M. E., & Berset, C. (1995). Use of a free radical method to evaluate antioxidant activity. LWT - Food Science and Technology, 28(1), 25-30. https://doi.org/10.1016/S0023-6438(95)80008-5

Çakmakçı, R., Mosber, G., Milton, A. H., Alatürk, F., & Ali, B. (2020). The effect of auxin and auxin-producing bacteria on the growth, essential oil yield, and composition in medicinal and aromatic plants. Current Microbiology, 77(4), 564-577. https://doi.org/10.1007/s00284-020-01917-4

Egamberdiyeva, D. (2007). The effect of plant growth-promoting bacteria on growth and nutrient uptake of maize in two different soils. Applied Soil Ecology, 36, 184-189. https://doi.org/10.1016/j.apsoil.2007.02.005

Etesami, H., Alikhani, H. A., & Hosseini, H. M. (2015). Indole-3-acetic acid (IAA) production trait, a useful screening to select endophytic and rhizosphere competent bacteria for rice growth promoting agents. MethodsX, 2, 72-78. https://doi.org/10.1016/j.mex.2015.02.008

Ferbiyanto, A., Rusmana, I., & Raffiudin, R. (2015). Characterization and identification of cellulolytic bacteria from the gut of worker Macrotermes gilvus. HAYATI Journal of Biosciences, 22(4), 197-200. https://doi.org/10.1016/j.hjb.2015.07.001

Fiodor, A., Ajijah, N., Dziewit, L., & Pranaw, K. (2023). Biopriming of seed with plant growth-promoting bacteria for improved germination and seedling growth. Frontiers in Microbiology, 14, Article 1142966. https://doi.org/10.3389/fmicb.2023.1142966

Fredriksson, N. J., Hermansson, M., & Wilén, B. M. (2013). The choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant. PloS ONE, 8(10), Article e76431. https://doi.org/10.1371/journal.pone.0076431

Gajula, D., Verghese, M., Boateng, J., Walker, L. T., Shackelford, L., Mentreddy, S. R., & Cedric, S. (2009). Determination of total phenolics, flavonoids and antioxidant and chemopreventive potential of basil (Ocimum basilicum L. and Ocimum tenuiflorum L.). International Journal of Cancer Research, 5(4), 130-143.

Getahun, A., Muleta, D., Assefa, F., & Kiros, S. (2020). Plant Growth-Promoting Rhizobacteria isolated from degraded habitat enhance drought tolerance of acacia (Acacia abyssinica Hochst. ex Benth.) seedlings. International Journal of Microbiology, 2020, Article 8897998. https://doi.org/10.1155/2020/8897998

Gomes, R. C., Sêmedo, L. T., Soares, R. M., Linhares, L. F., Ulhoa, C. J., Alviano, C. S., & Coelho, R. R. (2001). Purification of a thermostable endochitinase from Streptomyces RC1071 isolated from a cerrado soil and its antagonism against phytopathogenic fungi. Journal of Applied Microbiology, 90(4), 653-661. https://doi.org/10.1046/j.1365-2672.2001.01294.x

Holt, J. G., Krieg, N. R., Sneath, P. H. A., Staley, J. T., & Williams, S. T. (1994). Bergey’s manual of determinative bacteriology (9th ed.). Williams & Wilkins.

Jovičić, D., Štajner, D., Popović, B. M., Marjanović-Jeromela, A., Nikolić, Z., Petrović, G., & Ždero-Pavlović, R. (2017). Salt-induced changes in the antioxidant system of oilseed rape. Zemdirbyste-Agriculture, 104(3), 249–258. https://doi.org/10.13080/z-a.2017.104.032

Jurić, T., Pavlović, R. Ž., Uka, D., Beara, I., Majkić, T., Savić, S., Žekić, M., & Popović, B. M. (2024). Natural deep eutectic solvents-mediated extraction of rosmarinic acid from Lamiaceae plants: Enhanced extractability and anti-inflammatory potential. Industrial Crops and Products, 214, Article 118559. https://doi.org/10.1016/j.indcrop.2024.118559

Kang, S. M., Hamayun, M., Khan, M. A., Iqbal, A., & Lee, I. J. (2019). Bacillus subtilis JW1 enhances plant growth and nutrient uptake of Chinese cabbage through gibberellins secretion. Journal of Applied Botany and Food Quality, 92, 172-178. https://doi.org/10.5073/JABFQ.2019.092.023

Khoso, M. A., Wagan, S., Alam, I., Hussain, A., Ali, Q., Saha, S., Poudel, T. R., Manghwar, H., & Liu, F. (2024). Impact of Plant Growth-Promoting Rhizobacteria (PGPR) on plant nutrition and root characteristics: Current perspective. Plant Stress, 11, Article 100341. https://doi.org/10.1016/j.stress.2023.100341

Kinghorn, A. D., & Seo, E. K. (1996). Plants as sources of drugs. In G. Fuller, T. A. McKeon, & D. D. Bills (Eds.) Agricultural materials as renewable resources: Nonfood and industrial applications (pp. 179-193). American Chemical Society. https://doi.org/10.1021/bk-1996-0647.ch012

Kumar, R., Swapnil, P., Meena, M., Selpair, S., & Yadav, B. G. (2022). Plant Growth-Promoting Rhizobacteria (PGPR): Approaches to alleviate abiotic stresses for enhancement of growth and development of medicinal plants. Sustainability, 14(23), Article 15514. https://doi.org/10.3390/su142315514

Kumar, S., Abedin, M. M., Singh, A. K., & Das, S. (2020). Role of phenolic compounds in plant-defensive mechanisms. In R. Lone, R. Shuab, & A. N. Kamili (Eds.), Plant phenolics in sustainable agriculture (pp. 517-532). Springer. https://doi.org/10.1007/978-981-15-4890-1_22

Malik, A. A., Suryapani, S., & Ahmad, J. (2011). Chemical vs. organic cultivation of medicinal and aromatic plants: The choice is clear. International Journal of Medicinal and Aromatic Plants, 1, 5-13.

Mohanty, P., Singh, P. K., Chakraborty, D., Mishra, S., & Pattnaik, R. (2021). Insight into the role of PGPR in sustainable agriculture and environment. Frontiers in Sustainable Food Systems, 5, Article 667150. https://doi.org/10.3389/fsufs.2021.667150

Moncada, A., Miceli, A., & Vetrano, F. (2021). Use of plant growth-promoting rhizobacteria (PGPR) and organic fertilization for soilless cultivation of basil. Scientia Horticulturae, 275, Article 109733. https://doi.org/10.1016/j.scienta.2020.109733

Moncheva, P., Tishkov, S., Dimitrova, N., Chipeva, V., Antonova-Nikolova, S., & Bogatzevska, N. (2002). Characteristics of soil actinomycetes from Antarctica. Journal of Culture Collections, 3, 3-14.

National Center for Biotechnology Information. (n.d.a). BLAST: Basic Local Alignment Search Tool [Software]. National Library of Medicine. https://blast.ncbi.nlm.nih.gov/Blast.cgi

National Center for Biotechnology Information. (n.d.b). GenBank [Database]. National Library of Medicine. https://www.ncbi.nlm.nih.gov/genbank/

Nimisha, P., Moksha, S., & Gangawane, A. K. (2019). Amylase activity of starch degrading bacteria isolated from soil. International Journal of Current Microbiology and Applied Sciences, 8(4), 659-671. https://doi.org/10.20546/ijcmas.2019.804.071

Pagliarini, E., Gaggìa, F., Quartieri, M., Toselli, M., & Di Gioia, D. (2023). Yield and nutraceutical value of lettuce and basil improved by a microbial inoculum in greenhouse experiments. Plants (Basel), 12(8), Article 1700. https://doi.org/10.3390/plants12081700

Patel, P. R., Shaikh, S. S., & Sayyed, R. Z. (2018). Modified chrome azurol S method for detection and estimation of siderophores having affinity for metal ions other than iron. Environmental Sustainability, 1(1), 81-87. https://doi.org/10.1007/s42398-018-0008-3

Pop, A. V., Tofana, M., Socaci, S. A., Varban, D., Nagy, M., Borș, M. D., & Sfechiș, S. (2015). Evaluation of antioxidant activity and phenolic content in different Salvia officinalis L. extracts. Bulletin of the University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca. Food Science and Technology, 72(2), 210-214. https://doi.org/10.15835/buasvmcn-fst:11582

Popović, B. M., Štajner, D., Ždero-Pavlović, R., Tari, I., Csiszár, J., Gallé, Á., Poór, P., Galović, V., Trudić, B., & Orlović, S. (2017). Biochemical response of hybrid black poplar tissue culture (Populus × canadensis) on water stress. Journal of Plant Research, 130(3), 559-570. https://doi.org/10.1007/s10265-017-0918-4

Rajabi-Khamseh, S., Danesh-Shahraki, A., & Rafieiolhossaini, M. (2020). Stress tolerance in flax plants inoculated with Bacillus and Azotobacter species under deficit irrigation. Physiologia Plantarum, 170(2), 269-279. https://doi.org/10.1111/ppl.13154

Rizvi, A., Ahmed, B., Khan, M. S., El-Beltagi, H. S., Umar, S., & Lee, J. (2022). Bioprospecting plant growth promoting rhizobacteria for enhancing the biological properties and phytochemical composition of medicinally important crops. Molecules (Basel), 27(4), Article 1407. https://doi.org/10.3390/molecules27041407

Salantur, A., Ozturk, A., & Akten, S. (2006). Growth and yield response of spring wheat (Triticum aestivum L.) to inoculation with rhizobacteria. Plant, Soil and Environment, 52, 111-118. https://doi.org/10.17221/3354-PSE

Sarkar, R., Sarkar, M., & Roychoudhury, A. (2025). Rhizosphere microbiome signalling and biotic stress tolerance in plants. Journal of Stress Physiology & Biochemistry, 21(2), 57-83.

Shao, Z., Gu, S., Zhang, X., Xue, J., Yan, T., Guo, S., Pommier, T., Jousset, A., Yang, T., Xu, Y., Shen, Q., & Wei, Z. (2024). Siderophore interactions drive the ability of Pseudomonas spp. consortia to protect tomato against Ralstonia solanacearum. Horticulture Research, 11(9), Article uhae186. https://doi.org/10.1093/hr/uhae186

Sharma, A., Vaishnav, A., Jamali, H., Srivastava, A. K., Saxena, A. K., & Srivastava, A. (2016). Halophilic bacteria: Potential bioinoculants for sustainable agriculture and environment management under salt stress. In D. K. Choudhary, A. Varma, & N. Tuteja (Eds.), Plant–microbe interaction: An approach to sustainable agriculture (pp. 297-325). Springer. https://doi.org/10.1007/978-981-10-2854-0_14

Sharma, Y., Fagan, J., Schaefer, J., & Sharma, C. Y. (2019). Ethnobotany and medicinal properties of Salvia officinalis L. Journal of Pharmacognosy and Phytochemistry, 8(3), 3139-3148.

Singleton, V. L., Orthofer, R., & Lamuela-Raventós, R. M. (1999). Analysis of total phenols and other oxidation substrates and antioxidants by means of Folin–Ciocalteu reagent. Methods in Enzymology, 299, 152-178. https://doi.org/10.1016/S0076-6879(99)99017-1

Şirin, S., Aydaş, S. B., & Aslım, B. (2016). Biochemical evaluation of phenylalanine ammonia lyase from endemic plant Cyathobasis fruticulosa (Bunge) Aellen. for the dietary treatment of Phenylketonuria. Food Technology and Biotechnology, 54(3), 296-303. https://doi.org/10.17113/ftb.54.03.16.4519

Tao, G.-C., Tian, S.-J., Cai, M.-Y., & Xie, G.-H. (2008). Phosphate-solubilizing and -mineralizing abilities of bacteria isolated from soils. Pedosphere, 18(4), 515-523. https://doi.org/10.1016/S1002-0160(08)60042-9

Timofeeva, A., Galyamova, M., & Sedykh, S. (2022). Prospects for using phosphate-solubilizing microorganisms as natural fertilizers in agriculture. Plants (Basel), 11(16), Article 2119. https://doi.org/10.3390/plants11162119

Uçar, C. P., Selem, E., Tunçtürk, R., Tunçtürk, M., & Akköprü, A. (2023). Effect of endophytic bacteria on sage seedlings. Yuzuncu Yıl University Journal of Agricultural Sciences, 33(1), 130-139. https://doi.org/10.29133/yyutbd.1224658

World Health Organization. (2003). WHO guidelines on good agricultural and collection practices (GACP) for medicinal plants. https://www.who.int/publications/i/item/9241546271

Xie, F., Andrews, B., Asenjo, J. A., Goodfellow, M., & Pathom-Aree, W. (2024). Atacama desert actinomycetes: Taxonomic analysis, drought tolerance and plant growth promoting potential. World Journal of Microbiology & Biotechnology, 40(9), Article 283. https://doi.org/10.1007/s11274-024-04077-w

Zaman, G., Farooq, U., Bajwa, M. N., Jan, H., Shah, M., Ahmad, R., Andleeb, A., Drouet, S., Hano, C., & Abbasi, B. H. (2022). Effects of yeast extract on the production of phenylpropanoid metabolites in callus culture of purple basil (Ocimum Basilicum L. var purpurascens) and their in-vitro evaluation for antioxidant potential. Plant Cell, Tissue and Organ Culture, 150(3), 543-553. https://doi.org/10.1007/s11240-022-02303-7

Zare, M., Ganjeali, A., & Lahouti, M. (2021). Rosmarinic and caffeic acids contents in Basil (Ocimum basilicum L.) are altered by different levels of phosphorus and mycorrhiza inoculation under drought stress. Acta Physiologiae Plantarum, 43(2), Article 26. https://doi.org/10.1007/s11738-020-03191-0

Zhan, Y., An, X., Wang, S., Sun, M., & Zhou, H. (2020). Basil polysaccharides: A review on extraction, bioactivities and pharmacological applications. Bioorganic & Medicinal Chemistry, 28(1), Article 115179. https://doi.org/10.1016/j.bmc.2019.115179

Zhang, X., Zhan, Y., Zhang, H., Wang, R., Tao, X., Zhang, L., Zuo, Y., Zhang, L., Wei, Y., & Li, J. (2021). Inoculation of phosphate-solubilizing bacteria (Bacillus) regulates microbial interaction to improve phosphorus fractions mobilization during kitchen waste composting. Bioresource Technology, 340, Article 125714. https://doi.org/10.1016/j.biortech.2021.125714

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2026-09-02

How to Cite

Stamenov, D., Ždero Pavlović, R., Hajnal Jafari, T., Đurić, S., Popović, B., Petrovic, D., & Hasanagić, D. (2026). Impact of PGPR Seed Priming on Germination, Yield, and Metabolite Profile of Basil (Ocimum basilicum L.) and Sage (Salvia officinalis L.). Agrociencia Uruguay, 30, e1862. https://doi.org/10.31285/AGRO.30.1862

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Plant and microbial biotechnology

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